SARS-CoV-2 Variant Table

 

* Please see the appendix section of the COA for variant analysis of each virus lot.
 BEI #   Isolate Description  Alternate Name  Lineage  GISAID
 Clade
 GISAID ID for
 Clinical Sample
 (P0)/Passage
 AA Substitutions per GISAID*
Please see the appendix section of the COA for variant analysis on each virus lot.
 NR-53944   hCoV-19/Scotland/CVR837/2020   CVR-GLA-1 B.1.5 G  EPI_ISL_461705 (P0)  Spike D614G, NSP12, P323L
Please see the appendix section of the COA for variant analysis on each virus lot.
 NR-53945  hCoV-19/Scotland/CVR2224/2020   CVR-GLA-2 B.1.222 G  EPI_ISL_448167 (P0) Spike D614G, Spike N439K, NSP12 P323L
Please see the appendix section of the COA for variant analysis on each virus lot.
 NR-53953  hCoV-19/Denmark/DCGC-3024/2020   SARS-CoV-2/hu/DK/CL-5/1   B.1.1.298  GR  EPI_ISL_616802 (P0)  Spike D614G, Spike H69del, Spike I692V, Spike M1229I, Spike V70del, Spike Y453F, N G204R, N R203K, N S194L, NS3 H182Y, NSP1 M85del, NSP3 N1263del, NSP12 P323L, NSP12 T739I, NSP15 T112I
Please see the appendix section of the COA for variant analysis on each virus lot.
 NR-54000  hCoV-19/England/204820464/2020   UK/VUI/3/2020    B.1.1.7  GR  EPI_ISL_683466 (P0) Spike A570D, Spike D614G, Spike D1118H, Spike H69del, Spike N501Y, Spike P681H, Spike S982A, Spike T716I, Spike V70del, Spike Y145del, N D3L, N G204R, N R203K, N S235F, NS8 Q27stop, NS8 R52I, NS8 Y73C, NSP3 A890D, NSP3 A1305V, NSP3 I1412T, NSP3 T183I, NSP6 F108del, NSP6 G107del, NSP6 S106del, NSP12 P323L, NSP13 K460R, NSP14 E347G
Please see the appendix section of the COA for variant analysis on each virus lot.
 NR-54008  hCoV-19/South Africa/KRISP-EC-K005321/2020   501Y.V2.HVdelta or
 HVdF002 
B.1.351 GH  EPI_ISL_678570 (P0) Spike A243del, Spike A701V, Spike D80A, Spike D215G, Spike D614G, Spike E484K, Spike K417N, Spike L242del, Spike L244del, Spike N501Y, E P71L, N T205I, NS3 Q57H, NS3 S171L, NSP2 T85I, NSP3 K837N, NSP5 K90R, NSP6 F108del, NSP6 G107del, NSP6 S106del, NSP12 P323L
Please see the appendix section of the COA for variant analysis on each virus lot.
 NR-54009  hCoV-19/South Africa/KRISP-K005325/2020   501Y.V2.HV  B.1.351 GH  EPI_ISL_678615 (P0) Spike A243del, Spike A701V, Spike D80A, Spike D215G, Spike D614G, Spike E484K, Spike K417N, Spike L18F, Spike L242del, Spike L244del, Spike N501Y, E P71L, N T205I, NS3 Q57H, NS3 S171L, NS3 W131L, NS7a V93F, NSP2 T85I, NSP3 K837N, NSP5 K90R, NSP6 F108del, NSP6 G107del, NSP6 S106del, NSP12 P323L
Please see the appendix section of the COA for variant analysis on each virus lot.
 NR-54011  hCoV-19/USA/CA_CDC_5574/2020   hCoV-19/USA/CA-
 SEARCH-5574/2020 
 B.1.1.7  GR  EPI_ISL_751801 (P0) Spike A570D, Spike D614G, Spike D1118H, Spike H69del, Spike N501Y, Spike P681H, Spike S982A, Spike T716I, Spike V70del, Spike Y145del, M V70L, N D3L, N G204R, N R203K, N S235F, NS3 T223I, NS8 Q27stop, NS8 R52I, NS8 Y73C, NSP3 A890D, NSP3 I1412T, NSP3 T183I, NSP6 F108del, NSP6 G107del, NSP6 S106del, NSP12 P323L, NSP13 A454V, NSP13 K460R
Please see the appendix section of the COA for variant analysis on each virus lot.
 NR-54020  hCoV-19/USA/CA_UCSD_5574/2020     B.1.1.7   GR EPI_ISL_751801  Spike A570D, Spike D614G, Spike D1118H, Spike H69del, Spike N501Y, Spike P681H, Spike S982A, Spike T716I, Spike V70del, Spike Y144del, M V70L, N D3L, N G204R, N R203K, N S235F, NS3 T223I, NS8 Q27stop, NS8 R52I, NS8 Y73C, NSP3 A890D, NSP3 I1412T, NSP3 T183I, NSP6 F108del, NSP6 G107del, NSP6 S106del, NSP12 P323L, NSP13 A454V, NSP13 K460R
Please see the appendix section of the COA for variant analysis on each virus lot.
 NR-54981  hCoV-19/Japan/TY7-501/2021   TY7-501, hCoV-19/Japan/
 IC-0562/2021 (P0)
 P.1.
(or 20J/501Y.V3) 
 GR EPI_ISL_792681 (P0) and EPI_ISL_833366 (passage 1 in Vero E6 /TMPRSS2*)
*contains a G181V mutation compared with sequence from original sample.
EPI_ISL_833366: *Spike D138Y, Spike D614G, Spike E484K, Spike G181V, Spike H655Y, Spike K417T, Spike L18F, Spike N501Y, Spike P26S, Spike R190S, Spike T20N, Spike T1027I, Spike V1176F, N G204R, N P80R, N R203K, NS3 S253P, NS8 E92K, NSP3 K977Q, NSP3 S370L, NSP3 T186A, NSP6 F108del, NSP6 G107del, NSP6 S106del, NSP12 P323L, NSP13 E341D
Please see the appendix section of the COA for variant analysis on each virus lot.
 NR-54982  hCoV-19/Japan/TY7-503/2021    TY7-503, hCoV-19/Japan/
 IC-0564/2021 (P0)
 P.1.
(or 20J/501Y.V3)
 GR EPI_ISL_792683 (P0) and EPI_ISL_877769 (passage 1 in Vero E6 /TMPSS2*)
*contains a F184V mutation compared with sequence from original sample.
EPI_ISL_877769: *Spike D138Y, Spike D614G, Spike E484K, Spike H655Y, Spike K417T, Spike L18F, Spike N501Y, Spike P26S, Spike R190S, Spike T20N, Spike T1027I, Spike V1176F, N G204R, N P80R, N R203K, NS3 S253P, NS8 E92K, NSP3 K977Q, NSP3 S370L, NSP6 F108del, NSP6 F184V, NSP6 G107del, NSP6 S106del, NSP12 P323L, NSP13 E341D
Please see the appendix section of the COA for variant analysis on each virus lot.
 NR-54985  hCoV-19/USA/MD-HP12112/2021     B.1.1.207   GR  EPI_ISL_791427 (P0) Spike D614G, Spike E484K, Spike P681H, M V70F, N G204R, N R203K, NS3 A143S, NS3 V202L, NSP2 S248G, NSP3 H249Y, NSP3 M196T, NSP6 A2V, NSP12 P323L, NSP13 L122S
Please see the appendix section of the COA for variant analysis on each virus lot.
 NR-54986  hCoV-19/USA/MD-HP12155/2020      B.1.1.4  GR  EPI_ISL_791346 (P0) Spike D614G, Spike E484K, Spike G769V, Spike W152L, M F28L, N G204R, N Q418H, N R203K, N S187L, NSP2 H145Q, NSP3 P985L, NSP6 L37F, NSP12 P323L, NSP13 G439R, NSP14 P412H, NSP15 P118S
Please see the appendix section of the COA for variant analysis on each virus lot.
 NR-54987  hCoV-19/USA/MD-HP01101/2021      B.1.1.7  GR  EPI_ISL_825013 (P0) Spike A570D, Spike D614G, Spike D1118H, Spike H69del, Spike N501Y, Spike P681H, Spike S982A, Spike T716I, Spike V70del, Spike Y144del, N D3L, N G204R, N R203K, N S235F, NS8 K68stop, NS8 Q27stop, NS8 R52I, NS8 Y73C, NSP3 A890D, NSP3 I1412T, NSP3 T183I, NSP6 F108del, NSP6 G107del, NSP6 S106del, NSP12 P227L, NSP12 P323L, NSP14 P451S
Please see the appendix section of the COA for variant analysis on each virus lot.
 NR-55282  hCoV-19/USA/MD-HP01542/2021      B.1.351  GH  EPI_ISL_890360  Spike A243del, Spike A701V, Spike D80A, Spike D215G, Spike D614G, Spike E484K, Spike K417N, Spike L18F, Spike L242del, Spike L244del, Spike N501Y, E P71L, N T205I, NS3 G172C, NS3 Q57H, NS3 S171L, NSP2 T85I, NSP3 K837N, NSP5 K90R, NSP6 F108del, NSP6 G107del, NSP6 S106del, NSP12 P323L
Please see the appendix section of the COA for variant analysis on each virus lot.

 

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